高级检索+

油莎草CeARF基因家族的全基因组鉴定与表达分析

Genome-wide identification and expression analysis of the CeARF gene family in tigernut (Cyperus esculentus L.)

  • 摘要: 生长素响应因子(Auxin response factors,ARFs)是一类对于生长素信号途径十分重要的转录因子。本文以油莎草(Cyperus esculentus L.)基因组为研究对象,对ARF基因进行了生物信息学分析,并检测了其在盐胁迫处理后的油莎草幼苗中的表达量。结果显示,油莎草ARF基因编码的蛋白定位于细胞核;系统进化分析结果表明,油莎草共有14个CeARF蛋白,分布于3个亚家族中;蛋白均含有保守的B3和Auxin_resp结构域,大部分成员还含有Aux/IAA结构域。14个CeARF基因不均匀地分布在油莎草12条染色体上;基因均含有内含子,且不同基因的内含子数目差异较大。顺式作用元件分析显示,CeARF基因含有5类内源激素类响应元件。基因表达分析结果表明,盐胁迫后,5个CeARF基因在幼苗叶片中的表达显著下调。

     

    Abstract: Auxin response factors (ARFs) function as central transcriptional regulators within the auxin signal cascade and coordinate diverse developmental and stress-responsive processes. This study conducted a genome-wide survey of the CeARF gene family in tigernut (Cyperus esculentus L.), integrating identification of family members with analyses of physicochemical properties, subcellular localization, phylogenetic relationships, gene structures, conserved motifs, and cis-acting element prediction. Seedlings were subjected to salt stress, and transcript levels were quantified through fluorescence-based assays. Analysis of physicochemical properties indicated that CeARF proteins were subcellularly localized in the nucleus. Phylogenetic analysis revealed that CeARF proteins were distributed in three subfamilies. Conserved domain assessment showed that all 14 CeARF proteins contained B3 and Auxin_resp domains, and most also contained Aux/IAA domains. Genomic mapping indicated a dispersed distribution of the 14 CeARF genes rather than placement across all 12 chromosomes. Gene structure analysis showed intron-containing architectures with clear variation in intron number among genes. Further analysis revealed that the 14 CeARF genes contained five classes of endogenous hormone-responsive elements. Salt stress experiments demonstrated consistent down-regulation of five ARF genes across examined tissues.

     

/

返回文章
返回