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广义猪毛菜属不同光合作用途径植物的叶绿体基因组比较分析

Comparative analysis of chloroplast genomes of plants with different photosynthetic pathways in Salsola sensu lato

  • 摘要: 猪毛菜属(Salsola)是一类广布于全球干旱和半干旱地区的具有多样光合作用途径且属下分类颇具争议的植物类群。本研究采用高通量测序和组装注释获得C3-C4中间型植物松叶猪毛菜(Oreosalsola laricifolia (Litv. ex Drobow) Akhani)的叶绿体基因组,并与广义猪毛菜属已公布的17个叶绿体基因组进行序列比较,探究了广义猪毛菜属的系统发育关系。结果显示:(1)松叶猪毛菜叶绿体基因组全长151 880 bp,编码132个基因;(2)18个叶绿体基因组在长度、GC含量、编码的基因及数目、密码子使用偏好性方面均具有较高的保守性;(3)检测到10个叶绿体基因组高变区和1 131个简单重复序列;(4)分子系统发育结果高度支持散枝蓬属(Pyankovia)、梯翅蓬属(Climacoptera)和珍珠柴属(Caroxylon)的独立,但部分属间亲缘关系与已有分子研究结果存在系统发育不一致的现象;(5)光合作用途径在山猪毛菜属(Oreosalsola)的种间分化中发挥一定作用。研究结果丰富了C3-C4中间型植物松叶猪毛菜的遗传资源信息,增加了对广义猪毛菜属叶绿体基因组的理解,也为属内系统发育关系提供了新的见解。

     

    Abstract: Salsola represents a globally distributed lineage across arid and semi-arid regions and encompasses pronounced diversity in photosynthetic pathways, while remaining taxonomically contentious. In this study, the chloroplast (cp) genome of Oreosalsola laricifolia (Litv. ex Drobow) Akhani, a C3-C4 intermediate species, was generated through high-throughput sequencing, followed by de novo assembly and comprehensive annotation. Comparative genomic analyses incorporated 17 previously published chloroplast genomes from Salsola sensu lato, and phylogenetic relationships were reconstructed based on the complete chloroplast genome sequences. Results showed that the chloroplast genome of O. laricifolia was 151 880 bp and encoded 132 genes. Across all 18 genomes, structural organization, genome length, GC content, gene composition, and codon usage patterns remained highly conserved. Ten hypervariable regions and 1 131 simple sequence repeats were identified as candidate molecular markers for population genetics studies. Phylogenetic reconstruction robustly supported the segregation of Pyankovia, Climacoptera, and Caroxylon from the traditional Salsola, while revealing topological discordance relative to earlier molecular frameworks. Patterns of divergence further suggested that shifts in photosynthetic pathways contributed to intraspecific divergence within Oreosalsola. Collectively, these findings enrich the genetic resources for O. laricifolia and refine current understanding of chloroplast genome evolution and phylogenetic relationships within this challenging genus.

     

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